Publications

EMPERIE has contributed to the following publications in peer-reviewed scientific journals:

  1. Van Leeuwen et al, 2010. Human Picobirnaviruses Identified by Molecular Screening of Diarrhea  Samples, J. Clin. Microbiol. p.1787-1794;
  2. Munster et al, 2009, Pathogenesis and transmission of swine-origin 2009 A(H1N1) influenza in ferrets: Science  Jul.24;325 (5939);
  3. v.d. Brand et al, Severity of Pneumonia Due to New H1N1 Influenza Virus in Ferrets Is Intermediate between that due to Seasonal H1N1 Virus and HPAI H5N1 Virus: JID 2010:201
  4. van Riel et al, Seasonal and Pandemic Human Influenza Viruses Attach Better to Human Upper Respiratory Tract Epithelium than Avian Influenza Viruses: ., Am. Journal Path. 2010, Vol.176
  5. Panning et al. Detection of Influenza A(H1N1)v virus by real-time RT-PCR. Euro Surveill. 2009;14(36);
  6. Drexler JF, Helmer A, Kirberg H, Reber U, Panning M, Müller M, et al. Poor clinical sensitivity of rapid antigen test for influenza A pandemic (H1N1) 2009 virus. Emerg Infect Dis . 2009 Oct ;
  7. Drexler JF, Corman VM, Gloza-Rausch F, Seebens A, Annan A, et al. (2009) Henipavirus RNA in African Bats. PLoS ONE 4(7): e6367;
  8. Drexler JF et al. Genomic features and evolutionary constraints in Saffold-like cardioviruses. J Gen Virol. 2010 Jun;91(Pt 6):1418-27.
  9. Grywna K, Kupfer B, Panning M, Drexler JF et al. Detection of the genus Alphavirus by RT-PCR with diagnostic sensitivity. J Clin Microbiol. 2010 May 26. [Epub ahead of print].
  10. Müller MA, van der Hoek L et al. Human coronavirus NL63 open reading frame 3 encodes a virion-incorporated N-glycosylated membrane protein. Virol J. 2010 Jan 15;7:6.
  11. Garten et al, 2009, Antigenic and Genetic Characteristics of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans, Science 325 pp 197-210;
  12. Park et al, 2009 Quantifying the impact of Immune escape ion transmission dynamics of influenza, Science 326, pp 726 – 728;
  13. Alvarez et al, The envelope protein of severe acute respiratory syndrome coronavirus interacts with the non-structural protein 3 and is ubiquinated, Virology 402, 2010, pp. 281-291;
  14. Netland et al, Immunization with an attenuated severe acute respiratory syndrome coronavirus deleted in E protein protects against lethal respiratory disease, Virology 399, 2010, pp 120-128;
  15. Kalthoff D et al, Limited susceptibility of chickens, turkeys, and mice to pandemic (H1N1) 2009 VirusEmerg Infect Dis. 2010 Apr;16(4):703-5;
  16. Hoffmann B, Harder T, Lange E, Kalthoff D, Reimann I, Grund C, Oehme R, Vahlenkamp TW, Beer M. New real-time reverse transcriptase polymerase chain reactions facilitate detection and differentiation of novel A/H1N1 influenza virus in porcine and human samples. Berl Munch Tierarztl Wochenschr. 2010 Jul-Aug;123(7-8):286-92;
  17. Ghani AC; Baguelin M; Griffin J; Flasche S; Pebody R; van Hoek AJ; Cauchemez S; Hall IM; et al. (2009). The Early Transmission Dynamics of H1N1pdm Influenza in the United Kingdom. PLoS Curr Influenza. RRN1130; Fall inside an earth of sky-high marks with the help of examine here for info studying academic site.
  18. Truscott J; Fraser C; Hinsley W; Cauchemez S; Donnelly C; Ghani A; Ferguson N. (2009). Quantifying the transmissibility of human influenza and its seasonal variation in temperate regions. PLoS Curr Influenza. RRN1125;
  19. Herfst S, van den Brand JM, Schrauwen EJ, de Wit E, Munster VJ, van Amerongen G, Linster M, Zaaraoui F, van Ijcken WF, Rimmelzwaan GF, Osterhaus AD, Fouchier RA, Andeweg AC, Kuiken T., Pandemic 2009 H1N1 influenza viruses causes diffuse alveolar damage in cynomolgus macaques: Vet Pathol. 2010 Nov;47(6):1040-7. Epub 2010 Jul 20.
  20. Van Kerkhove MD, Asikainen T, Becker NG, Bjorge S, Desenclos JC, dos Santos T, Fraser C, Leung GM, Lipsitch M, Longini IM Jr, McBryde ES, Roth CE, Shay DK, Smith DJ, Wallinga J, White PJ, Ferguson NM, Riley S. Studies needed to address public health challenges of the 2009 H1N1 influenza pandemic: insights from modeling. ; WHO Informal Network for Mathematical Modelling for Pandemic Influenza H1N1 2009 (Working Group on Data Needs). PLoS Med. 2010 Jun 1;7(6):e1000275
  21. Schrauwen EJ, Herfst S, Chutinimitkul S, Bestebroer TM, Rimmelzwaan GF, Osterhaus AD, Kuiken T, Fouchier RA. Possible increased pathogenicity of pandemic (H1N1) 2009 influenza virus upon reassortment. Emerg Infect Dis. 2011 Feb;17(2):200-8;
  22. Chutinimitkul S, Herfst S, Steel J, Lowen AC, Ye J, van Riel D, Schrauwen EJ, Bestebroer TM, Koel B, Burke DF, Sutherland-Cash KH, Whittleston CS, Russell CA, Wales DJ, Smith DJ, Jonges M, Meijer A, Koopmans M, Rimmelzwaan GF, Kuiken T, Osterhaus AD, García-Sastre A, Perez DR, Fouchier RA.., Virulence-Associated Substitution D222G in Hemagglutinin of 2009 Pandemic Influenza A(H1N1) Virus Affects Receptor Binding, J Virol. 2010 Nov;84(22):11802-13. Epub 2010 Sep 15;
  23. Smits SL, van Leeuwen M, van der Eijk AA, Fraaij PL, Escher JC, Simon JH, Osterhaus AD. Human astrovirus infection in a patient with new-onset celiac disease. J Clin Microbiol. 2010 Sep;48(9):3416-8.
  24. Smits SL, van Leeuwen M, Kuiken T, Hammer AS, Simon JH, Osterhaus AD. Identification and characterization of deer astroviruses. J Gen Virol. 2010 Nov;91(Pt 11):2719-22.
  25. Marcus Panning, Robin Kobbe, Silke Vollbach, Jan Felix Drexler, Samuel Adjei, Ohene Adjei, Christian Drosten, Jürgen May, Anna Maria Eis-Hübinger. Novel Human Parvovirus 4 Genotype 3 in Infants, Ghana. Emerging Infectious Diseases. July 2010, p. 1143-1146
  26. Klaus Grywna, Bernd Kupfer, Marcus Panning, Jan Felix Drexler, Petra Emmerich, Christian Drosten and Beate M. Kuemmerer: Detection of All Species of the Genus Alphavirus by Reverse Transcription-PCR with Diagnostic Sensitivity. JOURNAL OF CLINICAL MICROBIOLOGY, Sept. 2010, p. 3386–3387
  27. Jan Felix Drexler, Florian Gloza-Rausch, Jörg Glende, Victor Max Corman, Doreen Muth, Matthias Goettsche, Antje Seebens, Matthias Niedrig, Susanne Pfefferle, Stoian Yordanov, Lyubomir Zhelyazkov, Uwe Hermanns, Peter Vallo, Alexander Lukashev, Marcel Alexander Muüller, Hongkui Deng, Georg Herrler, Christian Drosten. Genomic Characterization of Severe Acute Respiratory Syndrome-Related Coronavirus in European Bats and Classification of Coronaviruses based on Partial RNA-Dependent RNA Polymerase Gene Sequences. Journal of Virology,Nov. 2010, p. 11336–11349;
  28. G Grard, J F Drexler, S Lekana-Douki, M Caron, A Lukashev, D Nkoghe, J P Gonzalez, C Drosten, E Leroy. Type 1 wild poliovirus and putative enterovirus 109 in an outbreak of acute flaccid paralysis in Congo, October-November 2010. Euro Surveillance, Nov. 2010, p1-3;
  29. Jan Felix Drexler, Klaus Grywna, Alexander Lukashev, Andreas Stoöcker, Patrıcia Silva Almeida, Janett Wieseler, Tereza Cristina Medrado Ribeiro, Nadine Petersen, Hugo da Costa Ribeiro, Jr, Ilya Belalov, Beate Mareike Kümmerer, Christian Drosten. Full genome sequence analysis of parechoviruses from Brazil reveals geographical patterns in the evolution of non-structural genes and intratypic recombination in the capsid region.Journal of General Virology, Epub 2010, p. 564-571;
  30. Jan Felix Drexler, Victor Max Corman, Tom Wegner, Adriana Fumie Tateno, Rodrigo Melim Zerbinati, Florian Gloza-Rausch, Antje Seebens, Marcel A. Müller, and Christian Drosten: Amplification of Emerging Viruses in a Bat Colony. Emerging Infectious Diseases, March 2011, p.449-456;
  31. Wu JT, Ma ESK, Lee CK, Chu DKW, Ho PL, Shen AL, Ho A, Hung IFN, Riley S, Ho LM, Lin CK, Tsang T, Lo SV, Lau YL, Leung GM, Cowling BJ, Peiris JSM. The infection attack rate and severity of 2009 pandemic influenza (H1N1) in Hong Kong. Clin Infect Dis. 2010 Nov 15;51(10):1184-91.
  32. Wu JT, Ho A, Ma ESK, Lee CK,  Chu DKW,  Ho PL, Hung IFN, Ho LM, Lin CK,  Tsang T,  Lo SV, Lau YL,  Leung GM,  Cowling BJ, Peiris JSM. Estimating infection attack rates and severity in real-time during an influenza pandemic:  analysis of serial cross-sectional serologic surveillance data. PLoS Med. 2011 8(10):e1001103..
  33. Chu DK, Chin AW, Smith GJ, Chan KH, Guan Y, Peiris JS, Poon LL.2010. Detection of novel astroviruses in urban brown rats and previously known astroviruses in humans. J. Gen. Virol. 2010 Oct. 91:2457-62.
  34. de Vries M, Deijs M, Canuti M, van Schaik BD, Faria NR, van de Garde MD, Jachimowski LC, Jebbink MF, Jakobs M, Luyf AC, Coenjaerts FE, Claas EC, Molenkamp R, Koekkoek SM, Lammens C, Leus F, Goossens H, Ieven M, Baas F, van der Hoek L: A sensitive assay for virus discovery in respiratory clinical samples. PLoS One. 2011 Jan 24;6(1):e16118.
  35. Höper D, Hoffmann B, Beer M. A comprehensive deep sequencing strategy for full-length genomes of influenza a. PLoS One. 2011 Apr 29;6(4):e19075.
  36. Dufour, D., Mateos-Gomez, P. A., Enjuanes, L., Gallego, J., and Sola, I. 2011. Structure and functional relevance of a transcription-regulating sequence involved in coronavirus discontinuous RNA synthesis., J Virol. 2011 May;85(10):4963-73. Epub 2011 Mar 9.
  37. Sola, I., Galan, C., Mateos-Gomez, P. A., Palacio, L., Zuniga, S., Cruz, J. L., Almazan, F., and Enjuanes, L. 2011. The polypyrimidine tract-binding protein affects coronavirus rna accumulation levels and relocalizes viral RNAs to novel cytoplasmic domains different from replication- transcription sites. J. Virol., doi: 10.1128/JVI.00195-11.
  38. Nieto-Torres, J. L., DeDiego, M. L., Alvarez, E., Jimenez-Guardeño, J. M., Regla-Nava, J. A., Llorente, M., Kremer, L., Shuo, S., and Enjuanes, L. 2011. Subcellular localization and topology of severe acute respiratory syndome coronavirus envelope protein. Virology, doi: 10.1016/j.virol.2011.03.029.
  39. Enjuanes, L., Nieto-Torres, J. L., Jimenez-Guardeño, J. M., and DeDiego, M. L. 2011. Recombinant live vaccines to protect against the severe acute respiratory syndrome coronavirus. In “Replicating Vaccines. A new generation” (P. R. Dormitzer, C. Mandl, and R. Rappuoli, Eds.), pp. 73-97. Springer, Basel.
  40. Lorusso A, Vincent AL, Harland ML, Alt D, Bayles DO, Swenson SL, Gramer MR, Russell CA, Smith DJ, Lager KM, Lewis NS. Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008. . J Gen Virol. 2011 Apr;92(Pt 4):919-30.
  41. Horton DL, McElhinney LM, Marston DA, Wood JL, Russell CA, Lewis N, Kuzmin IV, Fouchier RA, Osterhaus AD, Fooks AR, Smith DJ. Quantifying antigenic relationships among the lyssaviruses. J Virol. 2010 Nov;84(22):11841-8. Epub 2010 Sep 8.
  42. Bodewes R, de Mutsert G, van der Klis FR, Ventresca M, Wilks S, Smith DJ, Koopmans M, Fouchier RA, Osterhaus AD, Rimmelzwaan GF. Clin Vaccine Immunol. 2011 Mar;18(3):469-76 Prevalence of antibodies against seasonal influenza A and B viruses in children in Netherlands.
  43. Höper, D., D. Kalthoff, B. Hoffmann, and M. Beer. 2012. Highly Pathogenic Avian Influenza Virus Subtype H5N1 Escaping Neutralization: More than HA Variation. J Virol 86:1394-1404.
  44. Florian Zirkel, Andreas Kurth, Phenix-Lan Quan, Thomas Briese, Heinz Ellerbrok, Georg Pauli, Fabian H. Leendertz, W. Ian Lipkin, John Ziebuhr, Christian Drosten, Sandra Junglen: An insect nidovirus emerging from a primary tropical rainforest. mBIO, 2(3): doi:10.1128.
  45. Cruz, J. L. G., Sola, I., Becares, M., Alberca, B., Plana, J., Enjuanes, L., and Zuñiga, S. 2011. Coronavirus gene 7 counteracts host defenses and modulates virus virulence. PLoS Pathog, 7(6): e1002090.
  46. DeDiego ML, Nieto-Torres JL, Jiménez-Guardeño JM, Regla-Nava JA, Álvarez E, et al. (2011) Severe Acute Respiratory Syndrome Coronavirus Envelope Protein Regulates Cell Stress Response and Apoptosis. PLoS Pathog 7(10): e1002315. doi:10.1371/journal.ppat.1002315.
  47. Alvarez E, DeDiego ML, Nieto-Torres JL, Jiménez-Guardeno JM, Marcos-Villar L, Enjuanes L. The envelope protein of severe acute respiratory syndrome coronavirus interacts with the non-structural protein 3 and is ubiquitinated. Virology 2010, 402:281-291.
  48. Nogales A, Galán C, Márquez-Jurado S, García-Gallo M, Kremer L, Enjuanes L, Almazán F. Immunogenic characterization and epitope mapping of transmissible gastroenteritis virus RNA dependent RNA polymerase. J Virological Methods 2011, 175:7-13.
  49. van Boheemen S, Bestebroer TM, Verhagen JH, Osterhaus AD, Pas SD, Herfst S, Fouchier RA. A family-wide rt-PCR assay for detection of paramyxoviruses and application to a large-scale surveillance study. PLoS One. 2012;7(4):e34961.
  50. Provacia L.B., S.L. Smits, B.E. Martina, V.S. raj, P.V. vand en Doel, G. van Amerongen, H. Moorman-Roest, A.D. Osterhaus, B.L. Haagmans (2011). Enteric coronavirus in ferrets, The Netherlands. Emerg Infect Dis. 17(8):1570-1.
  51. Smits S.L., L.L. Poon, M. van Leeuwen, P.N. Lau, H.K. Perera, J.S. Peiris, J.H. Simon, A.D. Osterhaus (2011). Genogroup I and II picobirnaviruses in respiratory tracts of pigs.Emerg Infect Dis. 17(12):2328-30.
  52. van den Brand J.M., M. van Leeuwen, C.M.E. Schapendonk, J.H. Simon, B.L. Haagmans, A.D.  Osterhaus, S.L. Smits (2012). Metagenomic analysis of the viral flora of pine marten and European badger feces.J Virol. 86(4):2360-5.
  53. Smits S.L., A. Manandhar, F. B. van Loenen, M. van Leeuwen, G.S. Baarsma, N. Dorrestijn, A. D.M.E. Osterhaus, T. P. Margolis, G. M.G.M. Verjans (2012). High Prevalence of Anelloviruses in Vitreous Fluid of Children With Seasonal Hyperacute Panuveitis.J Infect Dis. Accepted for publication.
  54. Drexler JF, Baumgarte S, de Souza Luna LK, Eschbach-Bludau M, Lukashev AN, Drosten C: Aichi virus shedding in high concentrations in patients with acute diarrhea. Emerging infectious diseases 2011, 17(8):1544-1548.
  55. Zirkel F, Kurth A, Quan PL, Briese T, Ellerbrok H, Pauli G, Leendertz FH, Lipkin WI, Ziebuhr J, Drosten C et al: An insect nidovirus emerging from a primary tropical rainforest. mBio 2011, 2(3):e00077-00011.
  56. Marklewitz M, Handrick S, Grasse W, Kurth A, Lukashev A, Drosten C, Ellerbrok H, Leendertz FH, Pauli G, Junglen S: Gouleako virus isolated from West African mosquitoes constitutes a proposed novel genus in the family Bunyaviridae. Journal of virology 2011, 85(17):9227-9234.
  57. Kuhl A, Hoffmann M, Muller MA, Munster VJ, Gnirss K, Kiene M, Tsegaye TS, Behrens G, Herrler G, Feldmann H et al: Comparative analysis of Ebola virus glycoprotein interactions with human and bat cells. The Journal of infectious diseases 2011, 204 Suppl 3:S840-849.
  58. Maganga GD, Bourgarel M, Ella GE, Drexler JF, Gonzalez JP, Drosten C, Leroy EM: Is Marburg virus enzootic in Gabon? The Journal of infectious diseases 2011, 204 Suppl 3:S800-803.
  59. Biesold SE, Ritz D, Gloza-Rausch F, Wollny R, Drexler JF, Corman VM, Kalko EK, Oppong S, Drosten C, Muller MA: Type I interferon reaction to viral infection in interferon-competent, immortalized cell lines from the African fruit bat Eidolon helvum. PloS one 2011, 6(11):e28131.
  60. Drexler JF, Baumgarte S, Eschbach-Bludau M, Simon A, Kemen C, Bode U, Eis-Hubinger AM, Madea B, Drosten C: Human cardioviruses, meningitis, and sudden infant death syndrome in children. Emerging infectious diseases 2011, 17(12):2313-2315.
  61.  Bertram S, Glowacka I, Muller MA, Lavender H, Gnirss K, Nehlmeier I, Niemeyer D, He Y, Simmons G, Drosten C et al: Cleavage and activation of the severe acute respiratory syndrome coronavirus spike protein by human airway trypsin-like protease. Journal of virology 2011, 85(24):13363-13372.
  62. Canuti M, Eis-Huebinger AM, Deijs M, de Vries M, Drexler JF, Oppong SK, Muller MA, Klose SM, Wellinghausen N, Cottontail VM et al: Two novel parvoviruses in frugivorous New and Old World bats. PloS one 2011, 6(12):e29140.
  63. Stocker A, Souza BF, Ribeiro TC, Netto EM, Araujo LO, Correa JI, Almeida PS, Peixoto de Mattos A, Ribeiro Hda C, Jr., Pedral-Sampaio DB et al: Cosavirus Infection in Persons with and without Gastroenteritis, Brazil. Emerging infectious diseases 2012, 18(4):656-659.
  64. Lukashev A, Drexler JF, Belalov I, Eschbach-Bludau M, Baumgarte S, Drosten C: Genetic variation and recombination in Aichi virus. The Journal of general virology 2012.
  65. Drexler JF, Reber U, Wuttkopf A, Eis-Hubinger AM, Drosten C: Performance of the novel QIAGEN artus QS-RGQ viral load assays compared to the Abbott RealTime system in genetically diversified HIV and HCV plasma specimens. Journal of clinical microbiology 2012.
  66. Lauber C, Ziebuhr J, Junglen S, Drosten C, Zirkel F, Nga PT, Morita K, Snijder EJ, Gorbalenya AE: Mesoniviridae: a proposed new family in the order Nidovirales formed by a single species of mosquito-borne viruses. Archives of virology 2012.
  67. Drexler JF, Corman VM, Muller MA, Maganga GD, Vallo P, Binger T, Gloza-Rausch F, Rasche A, Yordanov S, Seebens A et al: Bats host major mammalian paramyxoviruses. Nature communications 2012, 3:796. LeGoff J, Rousset D, Abou-Jaoudé G, Scemla A, Ribaud P, et al. (2012) I223R Mutation in Influenza A(H1N1)pdm09 Neuraminidase Confers Reduced Susceptibility to Oseltamivir and Zanamivir and Enhanced Resistance with H275Y. PLoS ONE 7(8): e37095. doi:10.1371/journal.pone.0037095
  68. LeGoff J, Rousset D, Abou-Jaoudé G, Scemla A, Ribaud P, et al. (2012) I223R Mutation in Influenza A(H1N1)pdm09 Neuraminidase Confers Reduced Susceptibility to Oseltamivir and Zanamivir and Enhanced Resistance with H275Y. PLoS ONE 7(8): e37095. doi:10.1371/journal.pone.0037095
  69. Chu DK, Leung CY, Gilbert M, Joyner PH, Ng EM, Tse TM, Guan Y, Peiris JS, Poon LL. 2011. Avian coronavirus in wild aquatic birds. J Virol. 85:12815-20
  70. Dorigatti I; Cauchemez S; Pugliese A; Ferguson NM. (Mar 2012). A new approach to characterising infectious disease transmission dynamics from sentinel surveillance: application to the Italian 2009-2010 A/H1N1 influenza pandemic. Epidemics. 4:9-21. doi:10.1016/j.epidem.2011.11.001
  71. de Silva E; Ferguson NM; Fraser C. (15 Feb 2012). Inferring pandemic growth rates from sequence data. J R Soc Interface. doi:10.1098/​rsif.2011.0850
  72. Sandbulte MR, Westgeest KB, Gao J, Xu XY, Klimov AI, Russell CA, Burke DF, Smith DJ, Fouchier RAM, Eichelberger MC. Discordant antigenic drift of neuraminidase and hemagglutinin in H1N1 and H3N2 influenza viruses. P NATL ACAD SCI USA 108(51):20748-20753 20 Dec 2011
  73. Mansfield KL, Horton DL, Johnson N, Li L, Barrett ADT, Smith DJ, Galbraith SE, Solomon T, Fooks AR. Flavivirus-induced antibody cross-reactivity J GEN VIROL 92:2821-2829 Dec 2011
  74. Abbas MA, Spackman E, Fouchier R, Smith D, Ahmed Z, Siddique N, Sarmento L, Naeem K, McKinley ET, Hameed A, et al. H7 avian influenza virus vaccines protect chickens against challenge with antigenically diverse isolates VACCINE 29(43):7424-7429 06 Oct 2011
  75. Lewis NS, Daly JM, Russell CA, Horton DL, Skepner E, Bryant NA, Burke DF, Rash AS, Wood JL, Chambers TM, et al. Antigenic and genetic evolution of equine influenza A (H3N8) virus from 1968 to 2007. J Virol 85(23):12742-12749 Dec 2011
  76. Daly GM, Bexfield N, Heaney J, Stubbs S, Mayer AP, Palser A, Kellam P, Drou N, Caccamo M, Tiley L, Alexander GJ, Bernal W, Heeney JL. A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing. PLoS One. 2011; 6(12):e28879.
  77. Depledge DP, Palser AL, Watson SJ, Lai IY, Gray ER, Grant P, Kanda RK, Leproust E, Kellam P, Breuer J. Specific capture and whole-genome sequencing of viruses from clinical samples. PLoS One. 2011; 6(11):e27805.
  78. A Fox, Hoa LNM, Horby P, van Doorn HR, Trung NV, Ha NH, Cap NT, Phu VD, Ha NM, Ngoc DNT, Ngoc BVT, Kieu HTT, Taylor WR, Farrar J, Wertheim H, Kinh NV. Severe Pandemic H1N1 2009 Infection is associated with Transient NK and T Deficiency and Aberrant CD8 Responses. Plos One, 2012. 7(2): e31535
  79. Fox A, Hung TM, Wertheim H, Hoa LNM, Vincent A, et al. (2013) Acute Measles Encephalitis in Partially Vaccinated Adults. PLoS ONE 8(8): e71671. doi:10.1371/journal.pone.0071671
  80. LV Tan, van Doorn HR, Nghia HDT, Chau TTH, Tu LTP,  de Vries M, Canuti M, Deijs M, Jebbink MF, Baker S, Bryant JE,  Tham NT, Chinh NTTB, Boni MF, Loi TQ, Phuong LT, Verhoeven JTP, Crusat M,  Jeeninga RE, Schultsz C, Chau NVV, Hien TT, van der Hoek L, Farrar J and de Jong MD. Identification of a New Cyclovirus in Cerebrospinal Fluid of Patients with Acute Central Nervous System Infections. MBio. 2013 Jun 18;4(3):e00231-13. doi: 10.1128/mBio.00231-13
  81. Deleted
  82. Fisher D, Hui D, Gao Z, Lee C, Oh MD, Bin C, Hien T, Patlovich K, Farrar J. Pandemic Response Lessons from Influenza H1N1 2009 in Asia. Respirology. 2011 May 31. doi: 10.1111/j.1440-1843.2011.02003.x.
  83. Sola, I., Mateos-Gomez, P. A., Almazan, F., Zuñiga, S., and Enjuanes, L. 2011. RNA-RNA and RNA-protein interactions in coronavirus replication and transcription.RNA Biol. 8, 237-248.
  84. Nieto-Torres, J. L., Dediego, M. L., Alvarez, E., Jimenez-Guardeno, J. M., Regla Nava, J. A., Llorente, M., Kremer, L., Shuo, S., and Enjuanes, L. 2011. Subcellular location and topology of severe acute respiratory syndrome coronavirus envelope protein. Virology 415, 69-82.
  85. Dufour, D., P. A. Mateos-Gomez, L. Enjuanes, J. Gallego, and I. Sola. 2011. Structure and functional relevance of a transcription-regulating sequence involved in coronavirus discontinuous RNA synthesis. J. Virol. 85, 4963-4973.
  86. Sola, I., Galan, C., Mateos-Gomez, P. A., Palacio, L., Zuñiga, S., Cruz, J. L., Almazan, F., and Enjuanes, L. 2011. The polypyrimidine tract-binding protein affects  coronavirus RNA accumulation levels andrelocalizes viral RNAs to novel cytoplasmic domains different from replication-transcriptionsites. J. Virol. 85, 5136-5149.
  87. Nogales, A., Galan, C., Marquez-Jurado, S., Garcia-Gallo, M., Kremer, L., Enjuanes, L., and Almazan, F. 2011. Immunogenic characterization and epitope mapping of transmissible gastroenteritis virus RNAdependent RNA polymerase.J. Virol. Methods 175, 7-13.
  88. Cruz, J. L. G., I. Sola, M. Becares, B. Alberca, J. Plana, L. Enjuanes, and S. Zuñiga. 2011. Coronavirus gene 7 counteracts host defenses and modulates virulence. PLoS Pathog. 7, e1002090.
  89. Mateos-Gomez, P. A., Zuniga, S., Palacio, L., Enjuanes, L., Sola, I.,  2011. Gene N proximal and distal RNA motifs regulate coronavirus nucleocapsid mRNA transcription. J. Virol. 85, 8968-8980.
  90. DeDiego, M. L., Nieto-Torres, J. L., Jimenez-Guardeno, J. M., Regla-Nava, J. A., Alvarez, E., Oliveros, J. C., Zhao, J., Fett, C., Perlman, S., Enjuanes, L., 2011. Severe acute respiratory syndrome coronavirus envelope protein regulates cell stress responseand apoptosis. PLoS pathog. 7, e1002315.
  91. Becker, N., H. Jöst, U. Ziegler, M. Eiden, D. Höper, P. Emmerich, E. Fichet-Calvet, D. U. Ehichioya, C. Czajka, M. Gabriel, B. Hoffmann, M. Beer, K. Tenner-Racz, P. Racz, S. Günther, M. Wink, S. Bosch, A. Konrad, M. Pfeffer, M. H. Groschup, and J. Schmidt-Chanasit. 2012. Epizootic emergence of Usutu virus in wild and captive birds in Germany. PLoS One 7:e32604-e32604.
  92. Deleted, due to double inclusion: see pub. 43
  93. Hoffmann, B., M. Scheuch, D. Höper, R. Jungblut, M. Holsteg, H. Schirrmeier, M. Eschbaumer, K. V. Goller, K. Wernike, M. Fischer, A. Breithaupt, T. C. Mettenleiter, and M. Beer. 2012. Novel orthobunyavirus in Cattle, Europe, 2011. Emerg Infect Dis 18:469-472.
  94. Goller KV, Höper D, Schirrmeier H, Mettenleiter TC, Beer M. Schmallenberg virus as possible ancestor of Shamonda virus. Emerg Infect Dis [Internet]. 2012 Oct [date cited]. http://dx.doi.org/10.3201/eid1810.120835
  95. Starick E, Lange E, Grund C, Grosse Beilage E, Dohring S, Maas A, Noe T, Beer M, Harder TC. 2012.  Reassortants of pandemic influenza A virus H1N1/2009 and endemic porcine HxN2 viruses emerge in swine populations in Germany. J Gen Virol. doi:10.1099/vir.0.042648-0
  96. Smits SL, Rahman M, Schapendonk CME, van Leeuwen M, Faruque ASG, Haagmans BL, et al. Calicivirus from novel Recovirus genogroup in human diarrhea, Bangladesh. Emerg Infect Dis, July 2012;
  97.  Smits S.L., M. van Leeuwen , C.M. Schapendonk, A.C. Schürch, R. Bodewes, B.L. Haagmans, A.D. Osterhaus (2012). Picobirnaviruses in the human respiratory tract. Emerg Infect Dis. 18(9):1539-40.
  98. Zaki AM, van Boheemen S, Bestebroer TM, Osterhaus AD, Fouchier RA.(2012). Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N Engl J Med. 367(19):1814-20.
  99. Müller MA, Raj VS, Muth D, Meyer B, Kallies S, Smits SL, Wollny R, Bestebroer TM, Specht S, Suliman T, Zimmermann K, Binger T, Eckerle I, Tschapka M, Zaki AM, Osterhaus AD, Fouchier RA, Haagmans BL, Drosten C. Human coronavirus EMC does not require the SARS-coronavirus receptor and maintains broad replicative capability in mammalian cell lines.  MBio. 2012 Dec 11;3(6). pii: e00515-12. doi: 10.1128/mBio.00515-12.
  100. Raj VS, Mou H, Smits SL, Dekkers DH, Müller MA, Dijkman R, Muth D, Demmers JA, Zaki A, Fouchier RA, Thiel V, Drosten C, Rottier PJ, Osterhaus AD, Bosch BJ, Haagmans BL. (2013). Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC. Nature 495(7440):251-4
  101. van Boheemen S, de Graaf M, Lauber C, Bestebroer TM, Raj VS, Zaki AM, Osterhaus AD, Haagmans BL, Gorbalenya AE, Snijder EJ, Fouchier RA. (2012). Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans. MBio. 3(6): e00473-12.
  102. Corman VM, Eckerle I, Bleicker T, Zaki A, Landt O, Eschbach-Bludau M, van Boheemen S, Gopal R, Ballhause M, Bestebroer TM, Muth D, Müller MA, Drexler JF, Zambon M, Osterhaus AD, Fouchier RM, Drosten C. (2012). Detection of a novel human coronavirus by real-time reverse-transcription polymerase chain reaction. Euro Surveill. 17(39): pii 20285.
  103. Corman VM, Müller MA, Costabel U, Timm J, Binger T, Meyer B, Kreher P, Lattwein E, Eschbach-Bludau M, Nitsche A, Bleicker T, Landt O, Schweiger B, Drexler JF, Osterhaus AD, Haagmans BL, Dittmer U, Bonin F, Wolff T, Drosten C. (2012). Assays for laboratory confirmation of novel human coronavirus (hCoV-EMC) infections. Euro Surveill. 17(49). doi:pii: 20334.
  104. Raj VS, Smits SL, Pas SD, Provacia LB, Moorman-Roest H, Osterhaus AD, Haagmans BL. (2012). Novel hepatitis E virus in ferrets, the Netherlands. Emerg Infect Dis. 18(8):1369-70.
  105. Bodewes R, Kik M, Stalin Raj V, Schapendonk C, Haagmans B, Smits SL, Osterhaus A. (2013). Detection of novel divergent arenaviruses in boid snakes with inclusion body disease in the Netherlands. J Gen Virol. 2013 Jun;94(Pt 6):1206-10. doi: 10.1099/vir.0.051995-0
  106. Bodewes R, van de Bildt MW, Schapendonk CM, van Leeuwen M, van Boheemen S, de Jong AA, Osterhaus AD, Smits SL, Kuiken T. (2013). Identification and characterization of a novel adenovirus in the cloacal bursa of gulls. Virology May 25;440(1):84-8. doi: 10.1016/j.virol.2013.02.011.
  107. Bodewes R, D. Morick, M.W.G. van de Bildt, N. Osinga, A. Rubio Garcı´a, G.J. Sa´nchez Contreras, S.L. Smits, L. A.P. Reperant, T. Kuiken, A.D.M.E. Osterhaus. (2013). Prevalence of phocine distemper virus specific antibodies: bracing for the next seal epizootic in north-western Europe. Emerging Microbes and Infections 2(e3): doi:10.1038
  108. Bodewes R, D. Morick, G. de Mutsert, N.Osinga, T. Bestebroer, S. van der Vliet, S.L. Smits, T. Kuiken, G.F. Rimmelzwaan, R.A.M. Fouchier, A.D.M.E. Osterhaus (2013). Recurring influenza B virus infections in seals. Emerg Infect Dis. 19(3):511-2.
  109. Marklewitz M, Gloza-Rausch F, Kurth A, Kümmerer BM, Drosten C, Junglen S.First isolation of an Entomobirnavirus from free-living insects.J Gen Virol. 2012 Nov;93(Pt 11):2431-5. doi: 10.1099/vir.0.045435-0. Epub 2012 Aug 8.
  110. Drexler JF, Seelen A, Corman VM, Fumie Tateno A, Cottontail V, Melim Zerbinati R, Gloza-Rausch F, Klose SM, Adu-Sarkodie Y, Oppong SK, Kalko EK, Osterman A, Rasche A, Adam A, Müller MA, Ulrich RG, Leroy EM, Lukashev AN, Drosten C. Bats worldwide carry hepatitis E-related viruses that form a putative novel genus within the family Hepeviridae.J Virol. 2012 Sep;86(17):9134-47. doi: 10.1128/JVI.00800-12. Epub 2012 Jun 13.
  111. Kümmerer BM, Grywna K, Gläsker S, Wieseler J, Drosten C. Construction of an infectious Chikungunya virus cDNA clone and stable insertion of mCherry reporter genes at two different sites.J Gen Virol. 2012 Sep;93(Pt 9):1991-5. doi: 10.1099/vir.0.043752-0. Epub 2012 Jun 6.
  112. Mahlakõiv T, Ritz D, Mordstein M, DeDiego ML, Enjuanes L, Müller MA, Drosten C, Staeheli P. Combined action of type I and type III interferon restricts initial replication of severe acute respiratory syndrome coronavirus in the lung but fails to inhibit systemic virus spread.J Gen Virol. 2012 Dec;93(Pt 12):2601-5. doi: 10.1099/vir.0.046284-0. Epub 2012 Sep 5.
  113. Drexler JF, Reber U, Muth D, Herzog P, Annan A, Ebach F, Sarpong N, Acquah S, Adlkofer J, Adu-Sarkodie Y, Panning M, Tannich E, May J, Drosten C, Eis-Hübinger AM. Human parvovirus 4 in nasal and fecal specimens from children, Ghana. Emerg Infect Dis. 2012 Oct;18(10):1650-3. doi: 10.3201/eid1810.111373.
  114. Reusken C, Mou H, Godeke G, van der Hoek L, Meyer B, Muller M, Haagmans B, de Sousa R, Schuurman N, Dittmer U, Rottier P, Osterhaus A, Drosten C, Bosch B, Koopmans M. Specific serology for emerging human coronaviruses by protein microarray. Euro Surveill. 2013 Apr 4;18(14).
  115. Corman V, Eickmann M, Landt O, Bleicker T, Brunink S, Eschbach-Bludau M, Matrosovich M, Becker S, Drosten C. Specific detection by real-time reverse-transcription PCR assays of a novel avian influenza A(H7N9) strain associated with human spillover infections in China. Euro Surveill. 2013 Apr 18;18(16). doi:pii: 20461.
  116. Annan A, Baldwin HJ, Corman VM, Klose SM, Owusu M, Nkrumah EE, Badu EK, Anti P, Agbenyega O, Meyer B, Oppong S, Sarkodie YA, Kalko EK, Lina PH, Godlevska EV, Reusken C, Seebens A, Gloza-Rausch F, Vallo P, Tschapka M, Drosten C, Drexler JF. Human Betacoronavirus 2c EMC/2012-related Viruses in Bats, Ghana and Europe. Emerg Infect Dis. 2013 Mar;19(3):456-9. doi: 10.3201/eid1903.121503.
  117. Buchholz U, Muller M, Nitsche A, Sanewski A, Wevering N, Bauer-Balci T, Bonin F, Drosten C, Schweiger B, Wolff T, Muth D, Meyer B, Buda S, Krause G, Schaade L, Haas W. Contact investigation of a case of human novel coronavirus infection treated in a German hospital, October-November 2012.Euro Surveill. 2013 Feb 21;18(8). doi:pii: 20406.
  118.  Corman VM, Drexler JF, Eckerle I, Roth WK, Drosten C, Eis-Hübinger AM. Zoonotic hepatitis E virus strains in German blood donors. Vox Sang. 2013 Feb;104(2):179-80. doi: 10.1111/j.1423-0410.2012.01638.x. Epub 2012 Aug 22.
  119. Kindler E, Jónsdóttir HR, Muth D, Hamming OJ, Hartmann R, Rodriguez R, Geffers R, Fouchier RA, Drosten C, Müller MA, Dijkman R, Thiel V. Efficient Replication of the Novel Human Betacoronavirus EMC on Primary Human Epithelium Highlights Its Zoonotic Potential.MBio. 2013 Feb 19;4(1). pii: e00611-12. doi: 10.1128/mBio.00611-12.
  120. Kopp A, Gillespie TR, Hobelsberger D, Estrada A, Harper JM, Miller RA, Eckerle I, Muller MA, Podsiadlowski L, Leendertz FH et al: Provenance and geographic spread of St. Louis encephalitis virus. mBio 2013, 4(3):e00322-00313.
  121. Drexler JF, Corman VM, Müller MA, Lukashev AN, Gmyl A, Coutard B, Adam A, Ritz D, Leijten LM, van Riel D, Kallies R, Klose SM, Gloza-Rausch F, Binger T, Annan A, Adu-Sarkodie Y, Oppong S, Bourgarel M, Rupp D, Hoffmann B, Schlegel M, Kümmerer BM, Krüger DH, Schmidt-Chanasit J, Setién AA, Cottontail VM, Hemachudha T, Wacharapluesadee S, Osterrieder K, Bartenschlager R, Matthee S, Beer M, Kuiken T, Reusken C, Leroy EM, Ulrich RG, Drosten C. Evidence for novel hepaciviruses in rodents. PLoS Pathog. 2013;9(6):e1003438. doi: 10.1371/journal.ppat.1003438. Epub 2013 Jun 20.
  122. Chu DK, Leung CY, Perera HK, Ng EM, Gilbert M, Joyner PH, Grioni A, Ades G, Guan Y, Peiris JS, Poon LL. 2012. A novel group of avian astroviruses in wild aquatic birds. J Virol. 86:13772-8. http://jvi.asm.org/content/86/24/13772.full.pdf+html
  123. Chan RW, Poon LL. 2013. The Emergence of Human Coronavirus EMC: How Scared Should We Be? MBio. 4: e00191-13. http://mbio.asm.org/content/4/2/e00191-13.full.pdf+html
  124. Wong CK, Zhu H, Li OT, Leung YH, Chan MC, Guan Y, Peiris JS, Poon LL. 2013. Molecular Detection of Human H7N9 Influenza A Virus Causing Outbreaks in China. Clin Chem. 59:10627.http://www.clinchem.org/content/early/2013/05/07/clinchem.2013.208975.long
  125. Wertheim JO, Chu DK, Peiris JS, Kosakovsky Pond SL, Poon LL. 2013. A case for the ancient origin of coronaviruses. J Virol. 87:7039-45. http://jvi.asm.org/content/87/12/7039.full.pdf+html
  126. Chan RW, Chan MC, Agnihothram S, Chan LL, Kuok DI, Fong JH, Guan Y, Poon LL, Baric RS, Nicholls JM, Peiris JS. 2013. Tropism and innate immune responses of the novel human betacoronavirus lineage C virus in human ex vivo respiratory organ cultures. J Virol.87(12):6604-6614.  http://jvi.asm.org/content/87/12/6604.full.pdf+html
  127. Starick E, Lange E, Grund C, Grosse Beilage E, Dohring S, Maas A, Noe T, Beer M, Harder TC. 2012.  Reassortants of pandemic influenza A virus H1N1/2009 and endemic porcine HxN2 viruses emerge in swine populations in Germany. J Gen Virol. doi:10.1099/vir.0.042648-0
  128. Fischer, M., Hoffmann, B., Goller, K.V., Höper, D., Wernike, K., Beer, M. 2013. A mutation ‘Hot Spot’ in the Schmallenberg virus M segment. J Gen Virol. 94, pp. 1161-1167.
  129. Beer, M., Conraths, F.J., Van Der Poel, W.H.M. 2013. “Schmallenberg virus” – A novel orthobunyavirus emerging in Europe. Epidemiology and Infection, 141 (1), pp. 1-8.
  130. Goller, K.V., Höper, D., Schirrmeier, H., Mettenleiter, T.C., Beer, M. 2012. Schmallenberg virus as possible ancestor of shamonda virus. Emerging Infectious Diseases, 18 (10), pp. 1644-1646. All people are glad about scan there paper writing service.
  131. Timm C. Harder, Elisabeth grosse Beilage, Elke Lange, Carolin Meiners, Stefanie Döhring, Stefan Pesch, Thomas Noé, Christian Grund , Martin Beer , Elke Starick. Expanded co-circulation of stable subtypes, emerging lineages and new sporadic reassortants of porcine influenza viruses in swine populations in Northwest Germany. J Virol. Oct 2013; 87(19): 10460–10476. doi:  10.1128/JVI.00381-13
  132. Kuiken T, Riteau B, Fouchier RA, Rimmelzwaan GF. Pathogenesis of influenza virus infections: the good, the bad and the ugly. Curr Opin Virol. 2012 Jun;2(3):276-86.
  133. Russell CA, Fonville JM, Brown AE, Burke DF, Smith DL, James SL, Herfst S, van Boheemen S, Linster M, Schrauwen EJ, Katzelnick L, Mosterín A, Kuiken T, Maher E, Neumann G, Osterhaus AD, Kawaoka Y, Fouchier RA, Smith DJ. The potential for respiratory droplet-transmissible A/H5N1 influenza virus to evolve in a mammalian host. Science. 2012 Jun 22;336(6088):1541-7.
  134. Herfst S, Schrauwen EJ, Linster M, Chutinimitkul S, de Wit E, Munster VJ, Sorrell EM, Bestebroer TM, Burke DF, Smith DJ, Rimmelzwaan GF, Osterhaus AD, Fouchier RA. Airborne transmission of influenza A/H5N1 virus between ferrets. Science. 2012 Jun 22;336(6088):1534-41.
  135. de Wilde AH, Ray VS, Oudshoorn D, Bestebroer TM, van Nieuwkoop S, Limpens RW, Posthuma CC, van der Meer Y, Bárcena M, Haagmans BL, Snijder EJ, van den Hoogen BG.Human coronavirus-EMC replication induces severe in vitro cytopathology and is strongly inhibited by cyclosporin A or interferon-alpha treatment. J Gen Virol. 2013 Apr 25. [Epub ahead of print].
  136. Dieu Ngan TT, Thomas S, Larsson M, Horby P, Diep NN, Dat VQ, Trung NV, Ha NH, van Doorn H R, Van Kinh N, Wertheim HF.  First report of human psittacosis in Vietnam.. J Infect. 2013 May;66(5):461-4. doi: 10.1016/j.jinf.2012.12.001. Epub 2012 Dec 7. No abstract available. PMID: 23228501
  137. Chheng K, Carter MJ, Emary K, Chanpheaktra N, Moore CE, Stoesser N, Putchhat H, Sona S, Reaksmey S, Kitsutani P, Sar B, van Doorn HR, Uyen NH, Van Tan L, Paris D, Blacksell SD, Amornchai P, Wuthiekanun V, Parry CM, Day NP, Kumar V. A prospective study of the causes of febrile illness requiring hospitalization in children in Cambodia.. PLoS One. 2013 Apr 9;8(4):e60634. doi: 10.1371/journal.pone.0060634. Print 2013. PMID: 23593267
  138. Ho Dang Trung N, Le Thi Phuong T, Wolbers M, Nguyen Van Minh H, Nguyen Thanh V, Van MP, Thieu NT, Van TL, Song DT, Thi PL, Thi Phuong TN, Van CB, Tang V, Ngoc Anh TH, Nguyen D, Trung TP, Thi Nam LN, Kiem HT, Thi Thanh TN, Campbell J, Caws M, Day J, de Jong MD, Van Vinh CN, Van Doorn HR, Tinh HT, Farrar J, Schultsz C. Aetiologies of central nervous system infection in Viet Nam: a prospective provincial hospital-based descriptive surveillance study.; VIZIONS CNS Infection Network. PLoS One. 2012;7(5):e37825. doi: 10.1371/journal.pone.0037825. Epub 2012 May 25. PMID: 22662232
  139. Hoa NT, Chieu TT, Do Dung S, Long NT, Hieu TQ, Luc NT, Nhuong PT, Huong VT, Trinh DT, Wertheim HF, Van Kinh N, Campbell JI, Farrar J, Chau NV, Baker S, Bryant JE. Streptococcus suis and porcine reproductive and respiratory syndrome, Vietnam. Emerg Infect Dis. 2013 Feb;19(2):331-3. doi: 10.3201/eid1902.120470. No abstract available. PMID: 23343623
  140. Boni MF, Chau NV, Dong N, Todd S, Nhat NT, de Bruin E, van Beek J, Hien NT, Simmons CP, Farrar J, Koopmans M. Population-level antibody estimates to novel influenza A/H7N9 J Infect Dis. 2013 May 17. [Epub ahead of print] PMID: 23687225
  141. Boni MF, Nguyen TD, de Jong MD, van Doorn HR Virulence attenuation during an influenza A/H5N1 pandemic.. Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120207. doi: 10.1098/rstb.2012.0207. Print 2013 Mar 19. PMID: 23382429
  142. de Vries M, Oude Munnink BB, Deijs M, Canuti M, Koekkoek SM, Molenkamp R, Bakker M, Jurriaans S, van Schaik BD, Luyf AC, Olabarriaga SD, van Kampen AH, van der Hoek L. Performance of VIDISCA-454 in feces-suspensions and serum. Viruses. 2012 Aug;4(8):1328-34. Epub 2012 Aug 22.
  143. Deleted (= publication 71)
  144. Verdia-Baguena, C., Nieto-Torres, J.L., Alcaraz, A., Dediego, M.L., Torres, J., Aguilella, V.M., Enjuanes, L., 2012. Coronavirus E protein forms ion channels with functionally and structurally-involved membrane lipids. Virology 432, 485-494.
  145. Fett, C., DeDiego, M.L., Regla-Nava, J.A., Enjuanes, L., Perlman, S., 2013. Complete protection against severe acute respiratory syndrome coronavirus-mediated lethal respiratory disease in aged mice by immunization with a mouse-adapted virus lacking E protein. J. Virol. 87, 6551-6559.
  146. Mateos-Gomez, P.A., Morales, L., Zuniga, S., Enjuanes, L., Sola, I., 2013. Long-distance RNA-RNA interactions in the coronavirus genome form high-order structures promoting discontinuous RNA synthesis during transcription. J. Virol. 87, 177-186.
  147. Westgeest KB, de Graaf M, Fourment M, Bestebroer TM, van Beek R, Spronken MI, de Jong JC, Rimmelzwaan GF, Russell CA, Osterhaus AD, Smith GJ, Smith DJ, Fouchier RA. Genetic evolution of the neuraminidase of influenza A (H3N2) viruses from 1968 to 2009 and its correspondence to hemagglutinin evolution. J Gen Virol. 2012 Sep;93(Pt 9):1996-2007. doi: 10.1099/vir.0.043059-0. Epub 2012 Jun 20.
  148. Wilks S, de Graaf M, Smith DJ, Burke DF, A review of influenza haemagglutinin receptor binding as it relates to pandemic properties. Vaccine 30(29):4369-4376 19 Jun 2012;
  149.  Cauchemez S; Epperson S; Biggerstaff M; Swerdlow D; Finelli L; Ferguson NM. (Mar 2013). Using routine surveillance data to estimate the epidemic potential of emerging zoonoses: application to the emergence of US swine origin influenza A H3N2v virus. PLoS Med. 10:e1001399.
  150. Cori, A, Ferguson NM, Fraser C, Cauchemez S (Nov 2013).A new framework and software to estimate time-varying reproduction numbers during epidemics. American Journal of Epidemiology 178(9):1505-12. doi: 10.1093/aje/kwt133.
  151. Watson SJ, Welkers MR, Depledge DP, Coulter E, Breuer JM, de Jong MD, Kellam P. Viral population analysis and minority-variant detection using short read next-generation sequencing. Philos Trans R Soc Lond B Biol Sci. 2013; 4;368(1614):20120205
  152. Cotten M, Lam TT, Watson SJ, Palser AL, Petrova V, Grant P, Pybus OG, Rambaut A, Guan Y, Pillay D, Kellam P, Nastouli E. Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus. Emerg Infect Dis. 2013 May;19(5). doi: 10.3201/eid1905.130057.
  153. Abdullah Assiri, Allison McGeer, Trish Perl, Connie Price, Abdullah Al Rabeeah, Derek Cummings, Zaki Alabdullatif, Maher Assad, Abdulmohsen Almulhim, Hatem Makhdoom, Hossam Madani, Rafat Alhakeem, Jaffar Al-Tawfiq, Matthew Cotten, Simon Watson, Paul Kellam, Alimuddin Zumla, Ziad Memish, Hospital Outbreak of Middle East Respiratory Syndrome Coronavirus. N Engl J Med 2013 19 June 2013, http://dx.doi.org/10.1056/NEJMoa1306742
  154. Berthet N, Paulous S, Coffey L, Frenkiel MP, Moltini I, Tran C, Martheus S, Ottone C, Ungeheuer MN, Renaudat C, Caro V, Dussart P, Gessain A, Desprès P (2013). Resequencing microarray method for molecular diagnosis of human arboviral diseases. J. Clin. Virol. 56 :322-7
  155. Tchankouo-Nguetcheu S, Bourguet E, Lenormand P, Rousselle JC, Namane A, Choumet V. (2012). Infection by chikungunya virus modulates the expression of several proteins in Aedes aegypti salivary glands. Parasit Vectors. 5: 264
  156. Filippone C, Marianneau P, Murri S, Mollard N, Avsic-Zupanc T, Chinikar S, Desprès P, Caro V, Gessain A, Berthet N, Tordo N. Molecular diagnostic and genetic characterization of highly pathogenic viruses : application during Crimean-Congo haemorrhagic fever outbreaks in Eastern Europe and in the Middle East. Clin Microbiol Infect. 2013 19(2):E118-28. doi: 10.1111/1469-0691.12075.
  157. Drexler JF, Geipel A, Konig A, Corman VM, van Riel D, Leijten LM, Bremer CM, Rasche A, Cottontail VM, Maganga GD et al: Bats carry pathogenic hepadnaviruses antigenically related to hepatitis B virus and capable of infecting human hepatocytes. PNAS 2013, 110(40):16151-16156.
  158. Ithete NL, Stoffberg S, Corman VM, Cottontail VM, Richards LR, Schoeman MC, Drosten C, Drexler JF, Preiser W: Close relative of human Middle East respiratory syndrome coronavirus in bat, South Africa. Emerging infectious diseases 2013, 19(10):1697-1699.
  159. Corman VM, Kallies R, Philipps H, Gopner G, Muller MA, Eckerle I, Brunink S, Drosten C, Drexler JF: Characterization of a novel betacoronavirus related to middle East respiratory syndrome coronavirus in European hedgehogs. Journal of virology 2014, 88(1):717-724.
  160. Kopp A, Gillespie TR, Hobelsberger D, Estrada A, Harper JM, Miller RA, Eckerle I, Muller MA, Podsiadlowski L, Leendertz FH et al: Provenance and geographic spread of St. Louis encephalitis virus. mBio 2013, 4(3):e00322-00313.
  161. Meyer B, Muller MA, Corman VM, Reusken CB, Ritz D, Godeke GJ, Lattwein E, Kallies S, Siemens A, van Beek J et al: Antibodies against MERS coronavirus in dromedary camels, United Arab Emirates, 2003 and 2013. Emerging infectious diseases 2014, 20(4):552-559.
  162. Reusken CB, Ababneh M, Raj VS, Meyer B, Eljarah A, Abutarbush S, Godeke GJ, Bestebroer TM, Zutt I, Muller MA et al: Middle East Respiratory Syndrome coronavirus (MERS-CoV) serology in major livestock species in an affected region in Jordan, June to September 2013. Euro surveillance: bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2013, 18(50):20662.
  163. Reusken CB, Haagmans BL, Muller MA, Gutierrez C, Godeke GJ, Meyer B, Muth D, Raj VS, Smits-De Vries L, Corman VM et al: Middle East respiratory syndrome coronavirus neutralising serum antibodies in dromedary camels: a comparative serological study. The Lancet infectious diseases 2013, 13(10):859-866.
  164. Corman VM, Rasche A, Diallo TD, Cottontail VM, Stocker A, Souza BF, Correa JI, Carneiro AJ, Franke CR, Nagy M et al: Highly diversified coronaviruses in neotropical bats. The Journal of general virology 2013, 94(Pt 9):1984-1994.
  165. Niemeyer D, Zillinger T, Muth D, Zielecki F, Horvath G, Suliman T, Barchet W, Weber F, Drosten C, Muller MA: Middle East respiratory syndrome coronavirus accessory protein 4a is a type I interferon antagonist. Journal of virology 2013, 87(22):12489-12495.
  166. Drosten C, Seilmaier M, Corman VM, Hartmann W, Scheible G, Sack S, Guggemos W, Kallies R, Muth D, Junglen S et al: Clinical features and virological analysis of a case of Middle East respiratory syndrome coronavirus infection. The Lancet infectious diseases 2013, 13(9):745-751.
  167. Hoffmann M, Muller MA, Drexler JF, Glende J, Erdt M, Gutzkow T, Losemann C, Binger T, Deng H, Schwegmann-Wessels C, Esser KH, Drosten C, Herrler G. 2013. Differential sensitivity of bat cells to infection by enveloped RNA viruses: coronaviruses, paramyxoviruses, filoviruses, and influenza viruses. PLoS One 8:e72942.
  168. Chu DK, Poon LL, Gomaa MM, Shehata MM, Perera RA, Zeid DA, El Rifay AS, Siu LY, Guan Y, Webby RJ, Ali MA, Peiris M, Kayali G. MERS coronaviruses in dromedary camels, Egypt. Emerg Infect Dis. In press (available online at: http://dx.doi.org/10.3201/eid2006.140299)
  169. Hemida MG, Chu DK, Poon LL,. Perera RA, Alhammadi MA, Ng HY, Siu LY, Guan Y, Alnaeem A, Peiris M. MERS coronavirus in dromedary camel herd, Saudi Arabia. Emerg Infect Dis. In press (available online at: http://dx.doi.org/10.3201/eid2007.140571)
  170. Hemida MG, Perera RA, Wang P, Alhammadi MA, Siu LY, Li M, Poon LL, Saif L, Alnaeem A, Peiris M. Middle East Respiratory Syndrome (MERS) coronavirus seroprevalence in domestic livestock in Saudi Arabia, 2010 to 2013. Euro Surveill. 2013 Dec 12;18(50):20659.
  171. Perera RA, Wang P, Gomaa MR, El-Shesheny R, Kandeil A, Bagato O, Siu LY, Shehata MM, Kayed AS, Moatasim Y, Li M, Poon LL, Guan Y, Webby RJ, Ali MA, Peiris JS, Kayali G. Seroepidemiology for MERS coronavirus using microneutralisation and pseudoparticle virus neutralisation assays reveal a high prevalence of antibody in dromedary camels in Egypt, June 2013. Euro Surveill. 2013 Sep 5;18(36):pii=20574.
  172. Phan TG, Vo NP, Boros Á, Pankovics P, Reuter G, Li OT, Wang C, Deng X, Poon LL, Delwart E. The viruses of wild pigeon droppings. PLoS One. 2013 Sep4;8(9):e72787.
  173. Smits SL, Zijlstra EE, van Hellemond JJ, Schapendonk CM, Bodewes R, Schürch AC, Haagmans BL, Osterhaus AD. Novel cyclovirus in human cerebrospinal fluid, Malawi, 2010-2011.Emerg Infect Dis. 2013;19(9). doi: 10.3201/eid1909.130404.
  174. Bodewes R, Rubio García A, Wiersma LC, Getu S, Beukers M, Schapendonk CM, van Run PR, van de Bildt MW, Poen MJ, Osinga N, Sánchez Contreras GJ, Kuiken T, Smits SL, Osterhaus AD. Novel b19-like parvovirus in the brain of a harbor seal. PLoS One. 2013 Nov 5;8(11):e79259. doi: 10.1371/journal.pone.0079259.
  175. Bodewes R, Raj VS, Kik MJ, Schapendonk CM, Haagmans BL, et al. (2014) Updated phylogenetic analysis of arenaviruses detected in boid snakes. J Virol 88: 1399-1400.
  176. Bodewes R, van de Bildt MW, van Elk CE, Bunskoek PE, van de Vijver DA, et al. (2014) No serological evidence that harbour porpoises are additional hosts of influenza B viruses. PLoS One 9: e89058.
  177. Bodewes R, van der Giessen J, Haagmans BL, Osterhaus AD, Smits SL. Identification of multiple novel viruses, including a parvovirus and a hepevirus, in feces of red foxes. J Virol. 2013 Jul;87(13):7758-64. doi: 10.1128/JVI.00568-13. Epub 2013 Apr 24.
  178. Smits SL, Raj VS, Oduber MD, Schapendonk CM, Bodewes R, Provacia L, Stittelaar KJ, Osterhaus AD, Haagmans BL. Metagenomic analysis of the ferret fecal viral flora. PLoS One. 2013 Aug 20;8(8):e71595. doi: 10.1371/journal.pone.0071595.
  179. Smits SL, Osterhaus AD. Virus discovery: one step beyond. Curr Opin Virol. 2013 Apr 8. pii: S1879-6257(13)00031-X. doi: 10.1016/j.coviro.2013.03.007. [Epub ahead of print]
  180. Raj VS, Smits SL, Provacia LB, van den Brand JM, Wiersma L, et al. (2014) Adenosine deaminase acts as a natural antagonist for dipeptidyl peptidase 4-mediated entry of the Middle East respiratory syndrome coronavirus. J Virol 88: 1834-1838.
  181. van den Brand JMA, Wiersma L, Smits SL, Provacia L, Raj VS, et al. (2014) The novel human coronavirus EMC causes disease in macaques but not in ferrets. Journal of Comparative Pathology 150: 81.
  182. Oude Munnink BB, Canuti M, Deijs M, de Vries M, Jebbink MF, Rebers S, Molenkamp R, van Hemert FJ, Chung K, Cotten M, Snijders F, Sol CJ, van der Hoek L. Unexplained diarrhoea in HIV-1 infected individuals. BMC Infect Dis. 2014 Jan 13;14:22. doi: 10.1186/1471-2334-14-22.
  183. Jazaeri Farsani SM, Jebbink MF, Deijs M, Canuti M, van Dort KA, Bakker M, Grady BP, Prins M, van Hemert FJ, Kootstra NA, van der Hoek L. Identification of a new genotype of Torque Teno Mini virus. Virol J. 2013 Oct 30;10:323. doi: 10.1186/1743-422X-10-323.)
  184. Oude Munnink BB, Jazaeri Farsani SM, Deijs M, Jonkers J, Verhoeven JT, Ieven M, Goossens H, de Jong MD, Berkhout B, Loens K, Kellam P, Bakker M, Canuti M, Cotten M, van der Hoek L. Autologous antibody capture to enrich immunogenic viruses for viral discovery. PLoS One. 2013 Nov 4;8(11):e78454. doi: 10.1371/journal.pone.0078454)
  185. Canuti M, van der Hoek L.Virus discovery: are we scientists or genome collectors? Trends Microbiol. 2014 May;22(5):229-31. doi: 10.1016/j.tim.2014.02.004.
  186. Cotten M, Oude Munnink B, Canuti M, Deijs M, Watson SJ, Kellam P, van der Hoek L.Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm. PLoS One. 2014 Apr 2;9(4):e93269. doi: 10.1371/journal.pone.0093269. eCollection 2014.
  187. Le Van Tan, de Jong MD, Nguyen VK, Nguyen VT, Taylor W, Wertheim HF, van der Ende A, van der Hoek L, Canuti M, Crusat M, Sona S, Nguyen HU, Giri A, Nguyen TT, Ho DT, Farrar J, Bryant JE, Tran TH, Nguyen VV, van Doorn HR.Limited geographic distribution of the novel cyclovirus CyCV-VN.Sci Rep. 2014 Feb 5;4:3967. doi: 10.1038/srep03967
  188. Memish, Z. A., Cotten, M., Meyer, B., Watson, S. J., Alsahafi, A. J., Al-Rabeeah, A. A., et al. (2014b). Human Infection with MERS Coronavirus after Exposure to Infected Camels, Saudi Arabia, 2013. Emerging Infectious Diseases, 20(6), 1012–1015. doi:10.3201/eid2006.140402.
  189. Cotten, M., Watson, S. J., Kellam, P., Al-Rabeeah, A. A., Makhdoom, H. Q., Assiri, A., et al. (2013b). Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study. Lancet, 382(9909), 1993–2002. doi:10.1016/S0140-6736(13)61887-5
  190. Cotten, M., Watson, S. J., Zumla, A. I., Makhdoom, H. Q., Palser, A. L., Ong, S. H., et al. (2014). Spread, circulation, and evolution of the Middle East respiratory syndrome coronavirus. mBio, 5(1). doi:10.1128/mBio.01062-13
  191. Memish, Z. A., Cotten, M., Watson, S. J., Kellam, P., Zumla, A., Alhakeem, R. F., et al. (2014c). Community Case Clusters of Middle East Respiratory Syndrome Coronavirus in Hafr Al-Batin, Kingdom of Saudi Arabia: A Descriptive Genomic study. International Journal of Infectious Diseases : IJID : Official Publication of the International Society for Infectious Diseases. doi:10.1016/j.ijid.2014.03.1372
  192. Memish ZA, Al-Tawfiq JA, Makhdoom HQ, Assiri A, Alhakeem RF, Albarrak A, Alsubaie S, Al-Rabeeah AA, Hajomar WH, Hussain R, Kheyami AM, Almutairi A, Azhar EI, Drosten C, Watson SJ, Kellam P, Cotten M, Zumla A. Respiratory Tract Samples, Viral Load and Genome Fraction Yield in patients with Middle East Respiratory Syndrome. J Infect Dis. 2014d May 15. pii: jiu292. [Epub ahead of print] PMID: 24837403
  193. Cotten, M., Petrova, V., Tra My P.V., Rabaa, M.A., Watson, S.J., Ong, S.H., Kellam, P. and Baker, S. Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting. (manuscript submitted).
  194. Respiratory Syncytial Virus Whole Genome Sequencing for Epidemiology, Evolution and Transmission studies. Charles N. Agoti, C.N, Munywoki, P.K., Medley, G.F., Cane, P.A., Nokes, D.J., Kellam, P. and Cotten, M. (manuscript in preparation).
  195. Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S,  Rambaut A, Enouf V, van der Werf S, Ferguson NMMiddle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility. Lancet Infect Dis. 2014 Jan;14(1):50-6. doi: 10.1016/S1473-3099(13)70304-9. Epub 2013 Nov 13.
  196. Giri A, Arjyal AKoirala SKarkey ADongol SThapa SDShilpakar OShrestha Rvan Tan LThi Thuy Chinh BNKrishna K C RPathak KRShakya MFarrar JVan Doorn HRBasnyat B. Aetiologies of central nervous system infections in adults in Kathmandu, Nepal: a prospective hospital-based study. Sci Rep. 2013;3:2382.
  197. Peto LNadjm BHorby PNgan TTvan Doorn RKinh NVWertheim HF. The bacterial aetiology of adult community-acquired pneumonia in Asia: a systematic review. Trans R Soc Trop Med Hyg. 2014 108(6):326-337.
  198. Fox AWhitehead SAnders KLHoa le NMMai le QThai PQYen NTDuong TNThoang DDFarrar JWertheim HSimmons CHien NTHorby P. Investigation of dengue and Japanese encephalitis virus transmission in Ha Nam, Viet Nam. Am J Trop Med Hyg. 2014 May;90(5):892-6.
  199. Thai PQ, Mai le Q, Welkers MR, Hang Nle K, Thanh le T, Dung VT, Yen NT, Duong TN, Hoa le NM, Thoang DD, Trang HT, de Jong MD, Wertheim H, Hien NT, Horby P, Fox A. Pandemic H1N1 virus transmission and shedding dynamics in index case households of a prospective Vietnamese cohort. J Infect. 2014 Jun;68(6):581-90.
  200. Fox AWhitehead SAnders KLHoa le NMMai le QThai PQYen NTDuong TNThoang DDFarrar JWertheim HSimmons CHien NTHorby P. Investigation of dengue and Japanese encephalitis virus transmission in Ha Nam, Viet Nam. Am J Trop Med Hyg. 2014 May;90(5):892-6.
  201. DeDiego, M. L., Nieto-Torres, J. L., Regla-Nava, J. A., Jimenez-Guardeno, J. M., Fernandez-Delgado, R., Fett, C., Castano-Rodriguez, C., Perlman, S., Enjuanes, L., 2014. Inhibition of NF-kappaB mediated inflammation in severe acute respiratory syndome coronavirus-infected mice increases survival. J. Virol. 88, 913-924.
  202. Almazan, F., Dediego, M.L., Sola, I., Zuniga, S., Nieto-Torres, J.L., Marquez Jurado, S., Andres, G., Enjuanes, L., 2013. Engineering a replication-competent, propagation-defective Middle East respiratory syndrome coronavirus as a vaccine candidate. mBio 4, e00650-00613.
  203. Regla-Nava, J. A., Jimenez-Guardeno, J. M., Nieto-Torres, J. L., Gallagher, T. M., Enjuanes, L., DeDiego, M. L. 2013. The replication of a mouse adapted SARS-CoV in a mouse cell line stably expressing the murine SARS-CoV receptor mACE2 efficiently induces the expression of proinflammatory cytokines. J. Virol. Methods 193, 639-646.
  204. Nieto-Torres, J.L., Dediego, M.L., Verdia-Baguena, C., Jimenez-Guardeno, J.M., Regla-Nava, J.A., Fernandez-Delgado, R., Castano-Rodriguez, C., Alcaraz, A., Torres, J., Aguilella, V.M., Enjuanes, L., 2014. Severe acute respiratory syndrome coronavirus envelope protein ion channel activity promotes virus fitness and pathogenesis. PLoS Pathog. 10, e1004077
  205. Jimenez-Guardeno, J. M., Nieto-Torres, J. L., Regla-Nava, J. A., DeDiego, M. L., Fernandez-Delgado, R., Castaño-Rodriguez, C., Enjuanes, L. 2014. The PDZ-binding motiv of severe acute respiratory syndrome coronavirus envelope protein is a novel determinant of viral pathogenisis. PLoS Pathog. In press 2014.
  206. DeDiego, M. L., Nieto-Torres, J. L., Jimenez-Guardeno, J. M., Regla-Nava, J. A., Castano-Rodriguez, C., Fernandez-Delgado, R., Usera, F., Enjuanes, L. 2014. Coronavirus virulence genes with main focus on SARS-CoV envelope gene. Virus Res., In press.
  207.  Almazan, F., Sola, I., Zuñiga, S., Marquez-Jurado, S., Morales, L., Becares, M., Enjuanes, L., 2014.  Coronavirus reverse genetic systems: Infectious clones and replicons. Virus Res., In press.
  208. Kalthoff D, Beer M, Hoffmann B. High resolution melting analysis: rapid and precise characterisation of recombinant influenza A genomes. Virol J. 2013 Sep 12;10:284. doi: 10.1186/1743-422X-10-284.
  209. Kalthoff D, Röhrs S, Höper D, Hoffmann B, Bogs J, Stech J, Beer M. Truncation and sequence shuffling of segment 6 generate replication-competent neuraminidase-negative influenza H5N1 viruses. J Virol. 2013 Dec;87(24):13556-68. doi: 10.1128/JVI.02244-13. Epub 2013 Oct 9.
  210. Kalthoff D, Bogs J, Harder T, Grund C, Pohlmann A, Beer M, Hoffmann B. Nucleic acid-based detection of influenza A virus subtypes H7 and N9 with a special emphasis on the avian H7N9 virus. Euro Surveill. 2014 Mar 13;19(10). pii: 20731.
  211. Röhrs S, Kalthoff D, Beer M. A model for early onset of protection against lethal challenge with highly pathogenic H5N1 influenza virus. Vaccine. 2014 May 7;32(22):2631-6. doi: 10.1016/j.vaccine.2014.03.019. Epub 2014 Mar 24.
  212. Kalthoff D, Bogs J, Grund C, Tauscher K, Teifke JP, Starick E, Harder TC, Beer M. Avian influenza H7N9/13 and H7N7/13: A comparative virulence study in chickens, pigeons, and ferrets. J Virol.  2014, in press.
  213. Szentiks CA, Tsangaras K, Abendroth B, Scheuch M, Stenglein MD, Wohlsein P, Heeger F, Höveler R, Chen W, Sun W, Damiani A, Nikolin V,Gruber AD, Grobbel M, Kalthoff D, Höper D, Czirják GÁ, Derisi J, Mazzoni CJ, Schüle A, Aue A, East ML, Hofer H, Beer M, Osterrieder N,Greenwood AD. Polar Bear Encephalitis: Establishment of a Comprehensive Next-generation Pathogen Analysis Pipeline for Captive and Free-living Wildlife. J Comp Pathol. 2014 May;150(4):474-88. doi: 10.1016/j.jcpa.2013.12.005. Epub 2013 Dec 19.
  214. Freuling CM, Abendroth B, Beer M, Fischer M, Hanke D, Hoffmann B, Höper D, Just F, Mettenleiter TC, Schatz J, Müller T. Molecular diagnostics for the detection of Bokeloh bat lyssavirus in a bat from Bavaria, Germany. Virus Res. 2013 Nov 6;177(2):201-4. doi: 10.1016/j.virusres.2013.07.021. Epub 2013 Aug 7.
  215. Fischer M, Hoffmann B, Goller KV, Höper D, Wernike K, Beer M. A mutation ‘hot spot’ in the Schmallenberg virus M segment. J Gen Virol. 2013 Jun;94(Pt 6):1161-7. doi: 10.1099/vir.0.049908-0. Epub 2013 Jan 30.
  216. Mindaugas Juozapaitis, Étori Aguiar Moreira, Ignacio Mena, Sebastian Giese, David Riegger, Anne Pohlmann, Dirk Höper, Gert Zimmer, Martin Beer, Adolfo García-Sastre, and Martin Schwemmle. An infectious bat chimeric influenza virus harboring the entry machinery of a conventional influenza A virus. Nat. Commun. 2014 , under revision.
  217. Richter, M., P. König, I. Reimann, and M. Beer. 2014. Npro of Bungowannah virus exhibits the same antagonistic function in the IFN induction pathway than that of other classical pestiviruses. Vet Microbiol 168:340-347.
  218. Maria Richter, Ilona Reimann, Horst Schirrmeier, Peter D. Kirkland, Martin Beer. The viral envelope is not sufficient to transfer the unique broad cell tropism of Bungowannah virus to a related pestivirus. Journal of General Virology, in revision.
  219. Smits SL, Schapendonk CM, van Leeuwen M, Kuiken T, Bodewes R, Stalin Raj V, Haagmans BL, das Neves CG, Tryland M, Osterhaus AD. Identification and characterization of two novel viruses in ocular infections in reindeer. PLoS One. 2013 Jul 16;8(7):e69711.
  220. Siegers JY, van de Bildt MW, van Elk CE, Schürch AC, Tordo N, Kuiken T, Bodewes R, Osterhaus AD. Genetic relatedness of dolphin rhabdovirus with fish rhabdoviruses. Emerg Infect Dis. 2014 Jun;20(6):1081-2.
  221. Dorigatti I., Cauchemez S., Ferguson N.M. (2013), Increased transmissiblity explains the third wave of infection by the 2009 H1N1 pandemic virus in England, PNAS, 10(33) : 13422-13427. doi: 10.1073/pnas.1303117110.
  222. Aguas R.Ferguson NM. (2013) Feature selection methods for identifying genetic determinants of host species in RNA viruses. PLoS Comput Biol. 9(10):e1003254 doi: 10.1371/journal.pcbi.1003254
  223. Cauchemez S, Van Kerkhove MD, Riley S, Donnelly CA, Fraser C, Ferguson NM (2013), Transmission scenarios for Middle East Respiratory Syndrome Coronavirus (MERS-CoV) and how to tell them apart, Eurosurveillance, 18:pii=20503 PMID: 23787162
  224. Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S, Rambaut A, Enouf V, van der Werf S, Ferguson NM, (Nov 2013), Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility, Lancet Infectious Diseases, 14: 50-56 doi:10.1016/S1473-3099(13)70304-9
  225. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C, Ferguson N (2014), Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data, PLoS Comput Biol. 10(1): e1003457 doi: 10.1371/journal.pcbi.1003457
  226. Ali ST, Kadi AS, Ferguson NM, 2013, Transmission dynamics of the 2009 influenza A (H1N1) pandemic in India: The impact of holiday-related school closure (2013) Epidemics,5:157-163 doi : 10.1016/j.epidem.2013.08.001
  227. Clapham HE, Tricou V, Van Vinh Chau N, Simmons CP, Ferguson NM (2014), Within-host viral dynamics of dengue serotype 1 infection., J R Soc Interface, 11:20140094  doi: 10.1098/​rsif.2014.0094
  228. Raj VS, Osterhaus AD, Fouchier RA, Haagmans BL. MERS: emergence of a novel human coronavirus. Curr Opin Virol. 2014 Apr;5C:58-62.
  229. van Boheemen S, Jones T, Muhlemann B, Feltkamp MC, Fouchier RA, and Hajdarbegovic E. Cidofovir Gel as Treatment of Follicular Spicules in Multiple Myeloma. JAMA dermatology, In press
  230. Linster M, van Boheemen S, de Graaf M, Schrauwen EJ, Lexmond P, Mänz B, Bestebroer TM, Baumann J, van Riel D, Rimmelzwaan GF, Osterhaus AD, Matrosovich M, Fouchier RA, Herfst S. Identification, characterization, and natural selection of mutations driving airborne transmission of A/H5N1 virus. Cell. 2014 Apr 10;157(2):329-39.)
  231. Richard M, Schrauwen EJ, de Graaf M, Bestebroer TM, Spronken MI, van Boheemen S, de Meulder D, Lexmond P, Linster M, Herfst S, Smith DJ, van den Brand JM, Burke DF, Kuiken T, Rimmelzwaan GF, Osterhaus AD, Fouchier RA Limited airborne transmission of H7N9 influenza A virus between ferrets. Nature. 2013 Sep 26;501(7468):560-3).
  232. Jonges M, Welkers MR, Jeeninga RE, Meijer A, Schneeberger P, Fouchier RA, de Jong MD, Koopmans M. Emergence of the virulence-associated PB2 E627K substitution in a fatal human case of highly pathogenic avian influenza virus A(H7N7) infection as determined by Illumina ultra-deep sequencing. J Virol. 2014 Feb;88(3):1694-702).
  233. Imai M, Herfst S, Sorrell EM, Schrauwen EJ, Linster M, De Graaf M, Fouchier RA, Kawaoka Y. Transmission of influenza A/H5N1 viruses in mammals. Virus Res. 2013 Dec 5;178(1):15-20)
  234. de Graaf M, Fouchier RA. Role of receptor binding specificity in influenza A virus transmission and pathogenesis. EMBO J. 2014 Apr 16;33(8):823-41).
  235. Koel BF, Burke DF, Bestebroer TM, van der Vliet S, Zondag GC, Vervaet G, Skepner E, Lewis NS, Spronken MI, Russell CA, Eropkin MY, Hurt AC, Barr IG, de Jong JC, Rimmelzwaan GF, Osterhaus AD, Fouchier RA, Smith DJ. Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution. Science. 2013 Nov 22;342(6161):976-9.)
  236. Smith, DJ; van Boheemen, S; de Rijck, JCWM; van Nieuwkoop. Excessive production and extreme editing of Human Metapneumovirus Defective Interfering RNA is Associated with Type I Interferon Induction Journal of General Virology, April 23, 2014, doi: 10.7554/eLife.01914.
  237. Bedford, T; Suchard, MA; Lemey, P; Dudas, G; Gregory, V; Hay, AJ; McCauley, JW; Russell, CA; Smith, DJ; Rambaut, A. Integrating influenza antigenic dynamics with molecular evolution. Elife. 2014 doi: 10.1099/vir.0.066100-0 J Gen Virol April 2014 vir.0.066100-0
  238. Beyer WEP, McElhaney J, Smith DJ, Monto AS, Nguyen-Van-Tam JS, Osterhaus ADME Cochrane re-arranged: Support for policies to vaccinate elderly people against influenza. Vaccine 2013 Oct 3 p6030– 6033 doi: 10.1016/j.vaccine.2013.09.063
  239. Ludi, A; Horton, D; Li, Y; Mahapatra, M; King, D; Knowles, N; Russell, C; Paton, D; Wood, J; Smith, D; Hammond, J. Antigenic Variation of Foot-and-Mouth Disease Virus Serotype A. Journal of General Virology Papers in Press. 95 (Pt2) Feb 2014; E-pub November 1, 2013 as doi:10.1099/vir.0.057521-0
  240. Guery B, Poissy J, el Mansouf L, Séjourné C, Ettahar N, Lemaire X, Vuotto F, Goffard A, Behillil S, Enouf V, Caro V, Mailles A, Che D, Manuguerra JC, Mathieu D, Fontanet A, van der Werf S; MERS-CoV study group. Clinical features and viral diagnosis of two cases of infection with Middle East Respiratory Syndrome coronavirus: a report of nosocomial transmission. Lancet. 2013 Jun 29;381(9885):2265-72. doi: 10.1016/S0140-6736(13)60982-4
  241. Filippone C, Marianneau P, Murri S, Mollard N, Avsic-Zupanc T, Chinikar S, Desprès P, Caro V, Gessain A, Berthet N, Tordo N. Molecular diagnostic and genetic characterization of highly pathogenic viruses : application during Crimean-Congo haemorrhagic fever outbreaks in Eastern Europe and in the Middle East. Clin Microbiol Infect. 2013 19(2):E118-28. doi: 10.1111/1469-0691.12075.
  242. Tordo N, Castel G, Filiponne C, Marianneau P. Recent data on Hantaviruses and perspectives for research (in French) Bull. Acad. Vét. France 2013 166-4 : 365-371.